NO, they won't
UFE is using the draft orders to create order and apply discounts. The Shopify shipping rules set on Shopify will not work with UFE discounts.
What are the draft orders and UFE discounts work?
Read article to know more.
Wanna know the work around to use shipping rules?
If you use UFE without discounts shipping rules will work as usual.
Read more in about this method in this article
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